PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03854A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 112aa    MW: 12913.4 Da    PI: 8.931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03854AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-091461347
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               +W+++E +++ +a + +G +   +W++++  mg  ++++++  +++++
  Oropetium_20150105_03854A 14 AWSKQENKKFEQALAYYGEDtpnRWDKVSTAMGGSKSAEEVWYHYLDL 61
                               8********************************99*********9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.771762IPR017877Myb-like domain
SMARTSM007179.7E-71164IPR001005SANT/Myb domain
SuperFamilySSF466899.72E-131370IPR009057Homeodomain-like
PfamPF002497.1E-81461IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MSGSRSSSPN SSSAWSKQEN KKFEQALAYY GEDTPNRWDK VSTAMGGSKS AEEVWYHYLD  60
LVDDVKKIES RQVPYPKYKE QGFWTYSVAN FPQGMPDNCV KDLKLRLWRF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-18682277RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961187.13e-32PREDICTED: protein RADIALIS-like 3
RefseqXP_015639473.13e-32PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB87e-20RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D3GAY43e-32A0A0D3GAY4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0A2X83e-32A0A0E0A2X8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DUQ93e-32A0A0E0DUQ9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0L5V43e-32A0A0E0L5V4_ORYPU; Uncharacterized protein
TrEMBLA0A0E0PRD23e-32A0A0E0PRD2_ORYRU; Uncharacterized protein
TrEMBLA2Y7K33e-32A2Y7K3_ORYSI; Putative uncharacterized protein
TrEMBLB9FI643e-32B9FI64_ORYSJ; Os05g0567600 protein
TrEMBLI1PY123e-32I1PY12_ORYGL; Uncharacterized protein
TrEMBLK3ZD533e-32K3ZD53_SETIT; Uncharacterized protein
STRINGBGIOSGA020378-PA8e-32(Oryza sativa Indica Group)
STRINGLOC_Os05g49240.18e-32(Oryza sativa Japonica Group)
STRINGORGLA05G0226000.18e-32(Oryza glaberrima)
STRINGSi024486m1e-31(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-19RAD-like 1